PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P24280_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 417aa    MW: 45320.2 Da    PI: 6.5068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P24280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21e-063183561255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ +++  L++++ +      +K + a++L++A+eYIk Lq
  GSMUA_Achr6P24280_001 318 RKEKLGDRITALQQIVSPF-----GKTDTASVLQEAIEYIKFLQ 356
                            6678889999******998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.195306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-7316359No hitNo description
SuperFamilySSF474598.64E-12316369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-4317361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9320362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAEDLQTGIC SGGSWWNPEG SGSFDAPTSM SCSTAMTDMI GGRAFCWSAA SGDDSAGSAG  60
GSSIAFQESN RMLQHSDIRP LLIDSAIPSF GLVSSSMNWT RPLSYGGRPE SSGLHAMLQE  120
DLGSRPYIRQ DTPAVSNQAR TGAESWTANP SSDMNQNLLV EQHHFSSGHE SSDAGVGSYQ  180
FMYGNRLMNG YQSPTTSYQG SSNELWQPSW AKFSHQFLKS SHPKQQSNNQ LQFTNNTPFW  240
NASAATSVGE IRSALCSPAT SQFDLQPRTI YRNLTAKMNP EGIHDSCSSS TMKTGSEPAA  300
TKKLRTETPS PLPTFKVRKE KLGDRITALQ QIVSPFGKTD TASVLQEAIE YIKFLQDQVG  360
VLSSPYLKMS DKSKDCSEPN QDLRSRGLCL VPVASTHPVA SETTADFWHP TFGGIFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405924.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLM0T9S40.0M0T9S4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P24280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-53bHLH family protein